Ecological factors driving avian influenza virus dynamics in Spanish wetland ecosystems.
Identifieur interne : 000333 ( Main/Exploration ); précédent : 000332; suivant : 000334Ecological factors driving avian influenza virus dynamics in Spanish wetland ecosystems.
Auteurs : Elisa Pérez-Ramírez [Espagne] ; Pelayo Acevedo ; Alberto Allepuz ; Xeider Gerrikagoitia ; Anna Alba ; Núria Busquets ; Sandra Díaz-Sánchez ; Vega Álvarez ; Francesc Xavier Abad ; Marta Barral ; Natàlia Maj ; Ursula HöfleSource :
- PloS one [ 1932-6203 ] ; 2012.
Descripteurs français
- KwdFr :
- Animaux (MeSH), Espagne (MeSH), Fèces (virologie), Grippe chez les oiseaux (épidémiologie), Humains (MeSH), Interactions hôte-pathogène (MeSH), Microbiologie de l'eau (MeSH), Oiseaux (virologie), Prévalence (MeSH), Saisons (MeSH), Virus de la grippe A (isolement et purification), Zones humides (MeSH), Écosystème (MeSH).
- MESH :
- isolement et purification : Virus de la grippe A.
- virologie : Fèces, Oiseaux.
- épidémiologie : Grippe chez les oiseaux.
- Animaux, Espagne, Humains, Interactions hôte-pathogène, Microbiologie de l'eau, Prévalence, Saisons, Zones humides, Écosystème.
- Wicri :
- geographic : Espagne.
English descriptors
- KwdEn :
- MESH :
- geographic : Spain.
- epidemiology : Influenza in Birds.
- isolation & purification : Influenza A virus.
- virology : Birds, Feces.
- Animals, Ecosystem, Host-Pathogen Interactions, Humans, Prevalence, Seasons, Water Microbiology, Wetlands.
Abstract
Studies exploring the ecological interactions between avian influenza viruses (AIV), natural hosts and the environment are scarce. Most work has focused on viral survival and transmission under laboratory conditions and through mathematical modelling. However, more integrated studies performed under field conditions are required to validate these results. In this study, we combined information on bird community, environmental factors and viral epidemiology to assess the contribution of biotic and abiotic factors in the occurrence of low pathogenic AIV in Spanish wetlands. For that purpose, seven locations in five different wetlands were studied during two years (2007-2009), including seven sampling visits by location. In each survey, fresh faeces (n = 4578) of wild birds and water samples were collected for viral detection. Also, the vegetation structure, water physical properties of wetlands, climatic conditions and wild bird community composition were determined. An overall AIV prevalence of 1.7%±0.4 was detected in faecal samples with important fluctuations among seasons and locations. Twenty-six AIV were isolated from the 78 RRT-PCR positive samples and eight different haemagglutinines and five neuraminidases were identified, being the combination H3N8 the most frequent. Variation partitioning procedures identified the combination of space and time variables as the most important pure factor - independently to other factors - explaining the variation in AIV prevalence (36.8%), followed by meteorological factor (21.5%) and wild bird community composition/vegetation structure (21.1%). These results contribute to the understanding of AIV ecological drivers in Spanish ecosystems and provide useful guidelines for AIV risk assessment identifying potential hotspots of AIV activity.
DOI: 10.1371/journal.pone.0046418
PubMed: 23152749
PubMed Central: PMC3495955
Affiliations:
Links toward previous steps (curation, corpus...)
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Xeider" sort="Gerrikagoitia, Xeider" uniqKey="Gerrikagoitia X" first="Xeider" last="Gerrikagoitia">Xeider Gerrikagoitia</name></author><author><name sortKey="Alba, Anna" sort="Alba, Anna" uniqKey="Alba A" first="Anna" last="Alba">Anna Alba</name></author><author><name sortKey="Busquets, Nuria" sort="Busquets, Nuria" uniqKey="Busquets N" first="Núria" last="Busquets">Núria Busquets</name></author><author><name sortKey="Diaz Sanchez, Sandra" sort="Diaz Sanchez, Sandra" uniqKey="Diaz Sanchez S" first="Sandra" last="Díaz-Sánchez">Sandra Díaz-Sánchez</name></author><author><name sortKey="Alvarez, Vega" sort="Alvarez, Vega" uniqKey="Alvarez V" first="Vega" last="Álvarez">Vega Álvarez</name></author><author><name sortKey="Abad, Francesc Xavier" sort="Abad, Francesc Xavier" uniqKey="Abad F" first="Francesc Xavier" last="Abad">Francesc Xavier Abad</name></author><author><name sortKey="Barral, Marta" sort="Barral, Marta" uniqKey="Barral M" first="Marta" last="Barral">Marta Barral</name></author><author><name sortKey="Maj, Natalia" sort="Maj, Natalia" uniqKey="Maj N" first="Natàlia" last="Maj">Natàlia Maj</name></author><author><name sortKey="Hofle, Ursula" sort="Hofle, Ursula" uniqKey="Hofle U" first="Ursula" last="Höfle">Ursula Höfle</name></author></analytic><series><title level="j">PloS one</title><idno type="eISSN">1932-6203</idno><imprint><date when="2012" type="published">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals (MeSH)</term><term>Birds (virology)</term><term>Ecosystem (MeSH)</term><term>Feces (virology)</term><term>Host-Pathogen Interactions (MeSH)</term><term>Humans (MeSH)</term><term>Influenza A virus (isolation & purification)</term><term>Influenza in Birds (epidemiology)</term><term>Prevalence (MeSH)</term><term>Seasons (MeSH)</term><term>Spain (MeSH)</term><term>Water Microbiology (MeSH)</term><term>Wetlands (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Animaux (MeSH)</term><term>Espagne (MeSH)</term><term>Fèces (virologie)</term><term>Grippe chez les oiseaux (épidémiologie)</term><term>Humains (MeSH)</term><term>Interactions hôte-pathogène (MeSH)</term><term>Microbiologie de l'eau (MeSH)</term><term>Oiseaux (virologie)</term><term>Prévalence (MeSH)</term><term>Saisons (MeSH)</term><term>Virus de la grippe A (isolement et purification)</term><term>Zones humides (MeSH)</term><term>Écosystème (MeSH)</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Spain</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Influenza in Birds</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Influenza A virus</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Virus de la grippe A</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Fèces</term><term>Oiseaux</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Birds</term><term>Feces</term></keywords><keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Grippe chez les oiseaux</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Ecosystem</term><term>Host-Pathogen Interactions</term><term>Humans</term><term>Prevalence</term><term>Seasons</term><term>Water Microbiology</term><term>Wetlands</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Espagne</term><term>Humains</term><term>Interactions hôte-pathogène</term><term>Microbiologie de l'eau</term><term>Prévalence</term><term>Saisons</term><term>Zones humides</term><term>Écosystème</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Espagne</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Studies exploring the ecological interactions between avian influenza viruses (AIV), natural hosts and the environment are scarce. Most work has focused on viral survival and transmission under laboratory conditions and through mathematical modelling. However, more integrated studies performed under field conditions are required to validate these results. In this study, we combined information on bird community, environmental factors and viral epidemiology to assess the contribution of biotic and abiotic factors in the occurrence of low pathogenic AIV in Spanish wetlands. For that purpose, seven locations in five different wetlands were studied during two years (2007-2009), including seven sampling visits by location. In each survey, fresh faeces (n = 4578) of wild birds and water samples were collected for viral detection. Also, the vegetation structure, water physical properties of wetlands, climatic conditions and wild bird community composition were determined. An overall AIV prevalence of 1.7%±0.4 was detected in faecal samples with important fluctuations among seasons and locations. Twenty-six AIV were isolated from the 78 RRT-PCR positive samples and eight different haemagglutinines and five neuraminidases were identified, being the combination H3N8 the most frequent. Variation partitioning procedures identified the combination of space and time variables as the most important pure factor - independently to other factors - explaining the variation in AIV prevalence (36.8%), followed by meteorological factor (21.5%) and wild bird community composition/vegetation structure (21.1%). These results contribute to the understanding of AIV ecological drivers in Spanish ecosystems and provide useful guidelines for AIV risk assessment identifying potential hotspots of AIV activity.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">23152749</PMID><DateCompleted><Year>2013</Year><Month>05</Month><Day>01</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1932-6203</ISSN><JournalIssue CitedMedium="Internet"><Volume>7</Volume><Issue>11</Issue><PubDate><Year>2012</Year></PubDate></JournalIssue><Title>PloS one</Title><ISOAbbreviation>PLoS ONE</ISOAbbreviation></Journal><ArticleTitle>Ecological factors driving avian influenza virus dynamics in Spanish wetland ecosystems.</ArticleTitle><Pagination><MedlinePgn>e46418</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pone.0046418</ELocationID><Abstract><AbstractText>Studies exploring the ecological interactions between avian influenza viruses (AIV), natural hosts and the environment are scarce. Most work has focused on viral survival and transmission under laboratory conditions and through mathematical modelling. However, more integrated studies performed under field conditions are required to validate these results. In this study, we combined information on bird community, environmental factors and viral epidemiology to assess the contribution of biotic and abiotic factors in the occurrence of low pathogenic AIV in Spanish wetlands. For that purpose, seven locations in five different wetlands were studied during two years (2007-2009), including seven sampling visits by location. In each survey, fresh faeces (n = 4578) of wild birds and water samples were collected for viral detection. Also, the vegetation structure, water physical properties of wetlands, climatic conditions and wild bird community composition were determined. An overall AIV prevalence of 1.7%±0.4 was detected in faecal samples with important fluctuations among seasons and locations. Twenty-six AIV were isolated from the 78 RRT-PCR positive samples and eight different haemagglutinines and five neuraminidases were identified, being the combination H3N8 the most frequent. Variation partitioning procedures identified the combination of space and time variables as the most important pure factor - independently to other factors - explaining the variation in AIV prevalence (36.8%), followed by meteorological factor (21.5%) and wild bird community composition/vegetation structure (21.1%). These results contribute to the understanding of AIV ecological drivers in Spanish ecosystems and provide useful guidelines for AIV risk assessment identifying potential hotspots of AIV activity.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Pérez-Ramírez</LastName><ForeName>Elisa</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Instituto de Investigación en Recursos Cinegéticos, UCLM-JCCM-CSIC, Ciudad Real, Spain. elisaperezramirez@gmail.com</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Acevedo</LastName><ForeName>Pelayo</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Allepuz</LastName><ForeName>Alberto</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Gerrikagoitia</LastName><ForeName>Xeider</ForeName><Initials>X</Initials></Author><Author ValidYN="Y"><LastName>Alba</LastName><ForeName>Anna</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Busquets</LastName><ForeName>Núria</ForeName><Initials>N</Initials></Author><Author ValidYN="Y"><LastName>Díaz-Sánchez</LastName><ForeName>Sandra</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Álvarez</LastName><ForeName>Vega</ForeName><Initials>V</Initials></Author><Author ValidYN="Y"><LastName>Abad</LastName><ForeName>Francesc Xavier</ForeName><Initials>FX</Initials></Author><Author ValidYN="Y"><LastName>Barral</LastName><ForeName>Marta</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Majó</LastName><ForeName>Natàlia</ForeName><Initials>N</Initials></Author><Author ValidYN="Y"><LastName>Höfle</LastName><ForeName>Ursula</ForeName><Initials>U</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2012</Year><Month>11</Month><Day>12</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>PLoS One</MedlineTA><NlmUniqueID>101285081</NlmUniqueID><ISSNLinking>1932-6203</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001717" MajorTopicYN="N">Birds</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017753" MajorTopicYN="Y">Ecosystem</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005243" MajorTopicYN="N">Feces</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D054884" MajorTopicYN="Y">Host-Pathogen Interactions</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009980" MajorTopicYN="N">Influenza A virus</DescriptorName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005585" MajorTopicYN="N">Influenza in Birds</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015995" MajorTopicYN="N">Prevalence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012621" MajorTopicYN="N">Seasons</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013030" MajorTopicYN="N" Type="Geographic">Spain</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014871" MajorTopicYN="N">Water Microbiology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D053833" 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sortKey="Abad, Francesc Xavier" sort="Abad, Francesc Xavier" uniqKey="Abad F" first="Francesc Xavier" last="Abad">Francesc Xavier Abad</name><name sortKey="Acevedo, Pelayo" sort="Acevedo, Pelayo" uniqKey="Acevedo P" first="Pelayo" last="Acevedo">Pelayo Acevedo</name><name sortKey="Alba, Anna" sort="Alba, Anna" uniqKey="Alba A" first="Anna" last="Alba">Anna Alba</name><name sortKey="Allepuz, Alberto" sort="Allepuz, Alberto" uniqKey="Allepuz A" first="Alberto" last="Allepuz">Alberto Allepuz</name><name sortKey="Alvarez, Vega" sort="Alvarez, Vega" uniqKey="Alvarez V" first="Vega" last="Álvarez">Vega Álvarez</name><name sortKey="Barral, Marta" sort="Barral, Marta" uniqKey="Barral M" first="Marta" last="Barral">Marta Barral</name><name sortKey="Busquets, Nuria" sort="Busquets, Nuria" uniqKey="Busquets N" first="Núria" last="Busquets">Núria Busquets</name><name sortKey="Diaz Sanchez, Sandra" sort="Diaz Sanchez, Sandra" uniqKey="Diaz Sanchez S" first="Sandra" last="Díaz-Sánchez">Sandra Díaz-Sánchez</name><name sortKey="Gerrikagoitia, Xeider" sort="Gerrikagoitia, Xeider" uniqKey="Gerrikagoitia X" first="Xeider" last="Gerrikagoitia">Xeider Gerrikagoitia</name><name sortKey="Hofle, Ursula" sort="Hofle, Ursula" uniqKey="Hofle U" first="Ursula" last="Höfle">Ursula Höfle</name><name sortKey="Maj, Natalia" sort="Maj, Natalia" uniqKey="Maj N" first="Natàlia" last="Maj">Natàlia Maj</name></noCountry><country name="Espagne"><noRegion><name sortKey="Perez Ramirez, Elisa" sort="Perez Ramirez, Elisa" uniqKey="Perez Ramirez E" first="Elisa" last="Pérez-Ramírez">Elisa Pérez-Ramírez</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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